Extract Posterior Inclusion Probabilities

Computes posterior inclusion probabilities from a model fitted with bgm() (edge inclusion) or bgmCompare() (difference inclusion).

Usage

extract_posterior_inclusion_probabilities(bgms_object)

Arguments

bgms_object

A fitted model object of class bgms (from bgm()) or bgmCompare (from bgmCompare()).

Value

A symmetric p x p matrix of posterior inclusion probabilities, with variable names as row and column names.

bgms

Off-diagonal entries are edge inclusion probabilities. Requires edge_selection = TRUE.

bgmCompare

Diagonal entries are main-effect inclusion probabilities; off-diagonal entries are pairwise difference inclusion probabilities. Requires difference_selection = TRUE.

See also

bgm(), bgmCompare(), extract_indicators()

Other extractors: extract_arguments(), extract_category_thresholds(), extract_ess(), extract_group_params(), extract_indicator_priors(), extract_indicators(), extract_log_odds(), extract_main_effects(), extract_pairwise_interactions(), extract_partial_correlations(), extract_precision(), extract_rhat(), extract_sbm()